org.ujmp.core.treematrix
Class AbstractTreeMatrix

java.lang.Object
  extended by java.lang.Number
      extended by org.ujmp.core.matrix.AbstractMatrix
          extended by org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix<Double>
              extended by org.ujmp.core.doublematrix.stub.AbstractDoubleMatrix
                  extended by org.ujmp.core.doublematrix.stub.AbstractSparseDoubleMatrix
                      extended by org.ujmp.core.doublematrix.stub.AbstractSparseDoubleMatrix2D
                          extended by org.ujmp.core.treematrix.AbstractTreeMatrix
All Implemented Interfaces:
Serializable, Cloneable, Comparable<Matrix>, TreeModel, HasAnnotation, BooleanCalculations, CanPerformCalculations, BasicDoubleCalculations, DoubleCalculations, BasicEntrywiseDoubleCalculations, CreatorDoubleCalculations, EntrywiseDoubleCalculations, HyperbolicDoubleCalculations, MiscEntrywiseDoubleCalculations, RoundingDoubleCalculations, TrigonometricDoubleCalculations, DecompositionDoubleCalculations, DiscretizeCalculations, GeneralDoubleCalculations, MiscGeneralDoubleCalculations, MissingValueDoubleCalculations, StatisticalDoubleCalculations, DoubleMatrix, DoubleMatrix2D, SparseDoubleMatrix, SparseDoubleMatrix2D, GenericMatrix<Double>, GenericMatrix2D<Double>, BasicMatrixProperties, Clearable, Conversions, CoordinateFunctions, CoreObject, DistanceMeasures, GettersAndSetters, HasGUIObject, HasLabel, IntCalculations, ExportMatrixInterface, Matrix, Matrix2D, SparseMatrix, SparseMatrix2D, ObjectCalculations, StringCalculations, Tree, TreeMatrix
Direct Known Subclasses:
DefaultTreeMatrix, ObjectTreeMatrix

public abstract class AbstractTreeMatrix
extends AbstractSparseDoubleMatrix2D
implements TreeMatrix

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.ujmp.core.Matrix
Matrix.StorageType
 
Field Summary
 
Fields inherited from class org.ujmp.core.doublematrix.stub.AbstractSparseDoubleMatrix2D
factory
 
Fields inherited from interface org.ujmp.core.doublematrix.SparseDoubleMatrix2D
factory
 
Fields inherited from interface org.ujmp.core.Matrix
ALL, chol, COLUMN, divideMatrix, divideScalar, eig, inv, LINK, lu, minusMatrix, minusScalar, mtimes, NEW, NONE, ORIG, plusMatrix, plusScalar, qr, ROW, solve, svd, timesMatrix, timesScalar, transpose, X, Y, Z
 
Constructor Summary
AbstractTreeMatrix()
           
 
Method Summary
 void addChild(Object parent, Object child)
           
 void addChildren(Object parent, Collection<? extends Object> children)
           
 void addObject(Object o)
           
 void addTreeModelListener(TreeModelListener l)
           
 boolean contains(long... coordinates)
          Determines if the given Coordinates are part of the Matrix.
 Object getChild(Object parent, int index)
           
 int getChildCount(Object parent)
           
 double getDouble(int row, int column)
           
 double getDouble(long row, long column)
           
 int getIndexOfChild(Object parent, Object child)
           
 int getNumberOfObjects()
           
 Object getObject(int index)
           
 Object getParent(Object o)
           
 long[] getSize()
           
 Matrix.StorageType getStorageType()
           
 boolean isChild(int parentId, int childId)
           
 boolean isChild(Object parent, Object child)
           
 boolean isLeaf(Object node)
           
 void removeChild(Object parent, Object child)
           
 void removeTreeModelListener(TreeModelListener l)
           
 void setDouble(double value, int row, int column)
           
 void setDouble(double value, long row, long column)
           
 void valueForPathChanged(TreePath path, Object newValue)
           
 
Methods inherited from class org.ujmp.core.doublematrix.stub.AbstractSparseDoubleMatrix2D
allCoordinates, getDouble, getFactory, getObject, getObject, setDouble, setObject, setObject
 
Methods inherited from class org.ujmp.core.doublematrix.stub.AbstractDoubleMatrix
getAsDouble, getObject, getValueType, setAsDouble, setObject
 
Methods inherited from class org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix
getAsObject, setAsObject
 
Methods inherited from class org.ujmp.core.matrix.AbstractMatrix
abs, addMissing, allValues, and, and, append, appendHorizontally, appendVertically, atimes, availableCoordinates, bigDecimalValue, bigIntegerValue, booleanValue, bootstrap, bootstrap, ceil, center, charValue, chebyshevDistanceTo, chol, clear, clone, compareTo, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, convert, copy, corrcoef, cos, cosh, countMissing, cov, cumprod, cumsum, dateValue, delete, delete, delete, deleteColumns, deleteColumns, deleteColumnsWithMissingValues, deleteRows, deleteRows, deleteRowsWithMissingValues, det, diff, discretize, discretizeToColumns, divide, divide, divide, divide, doubleValue, eig, eigSymm, eq, eq, equals, equalsAnnotation, equalsContent, euklideanDistanceTo, exp, exportToClipboard, exportToFile, exportToFile, exportToFile, exportToFile, exportToStream, exportToString, exportToWriter, extractAnnotation, eye, fadeIn, fadeOut, fill, flipdim, floatValue, floor, ge, ge, getAbsoluteValueMean, getAbsoluteValueSum, getAnnotation, getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsChar, getAsDate, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsShort, getAsString, getAxisAnnotation, getAxisAnnotation, getColumnCount, getColumnForLabel, getColumnLabel, getColumnObject, getCoordinatesOfMaximum, getCoordinatesOfMinimum, getCoreObjectId, getDimensionCount, getEuklideanValue, getGUIObject, getLabel, getMatrixAnnotation, getMaxValue, getMeanValue, getMinValue, getPositionForLabel, getPreferredObject, getRMS, getRowCount, getRowForLabel, getRowLabel, getRowObject, getSize, getStdValue, getValueCount, getValueSum, getZCount, ginv, gt, gt, impute, includeAnnotation, indexOfMax, indexOfMin, intValue, inv, invSPD, invSymm, isColumnVector, isDiagonal, isEmpty, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSparse, isSPD, isSquare, isSymmetric, isTransient, le, le, log, log10, log2, longValue, lowerCase, lt, lt, lu, manhattenDistanceTo, max, mean, min, minkowskiDistanceTo, minus, minus, minus, minus, mtimes, mtimes, mtimes, mtimes, mutualInf, ne, ne, nonZeroCoordinates, norm1, norm2, normalize, normF, normInf, not, notifyGUIObject, ones, or, or, pairedTTest, pinv, plus, plus, plus, plus, power, power, princomp, prod, qr, rand, randn, rank, removePunctuation, removeWords, replace, replaceMissingBy, replaceRegex, replaceRegex, reshape, round, select, select, select, selectColumns, selectColumns, selectedCoordinates, selectedCoordinates, selectRows, selectRows, setAnnotation, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsChar, setAsDate, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsShort, setAsString, setAxisAnnotation, setAxisAnnotation, setColumnLabel, setColumnObject, setLabel, setMatrixAnnotation, setRowLabel, setRowObject, setSize, showGUI, shuffle, sign, sin, sinh, solve, solveSPD, solveSymm, sortrows, sqrt, squeeze, standardize, std, stem, stringValue, subMatrix, sum, svd, swap, tan, tanh, tfIdf, times, times, times, times, toBigDecimalArray, toBigDecimalMatrix, toBigIntegerArray, toBigIntegerMatrix, toBooleanArray, toBooleanMatrix, toByteArray, toByteMatrix, toCharArray, toCharMatrix, toColumnVector, toDateArray, toDateMatrix, toDoubleArray, toDoubleMatrix, toFloatArray, toFloatMatrix, toIntArray, toIntMatrix, toListMatrix, toLongArray, toLongMatrix, toMapMatrix, toObjectArray, toObjectMatrix, toRowVector, toSetMatrix, toShortArray, toShortMatrix, toString, toStringArray, toStringMatrix, trace, transpose, transpose, transpose, tril, triu, unique, uniqueValueCount, upperCase, var, xor, xor, zeros
 
Methods inherited from class java.lang.Number
byteValue, shortValue
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface org.ujmp.core.doublematrix.SparseDoubleMatrix2D
getFactory
 
Methods inherited from interface org.ujmp.core.genericmatrix.GenericMatrix2D
getObject, getObject, setObject, setObject
 
Methods inherited from interface org.ujmp.core.doublematrix.DoubleMatrix
getDouble, setDouble
 
Methods inherited from interface org.ujmp.core.genericmatrix.GenericMatrix
getObject, setObject
 
Methods inherited from interface org.ujmp.core.Matrix
clone
 
Methods inherited from interface org.ujmp.core.interfaces.CoreObject
getCoreObjectId
 
Methods inherited from interface org.ujmp.core.interfaces.Clearable
clear
 
Methods inherited from interface org.ujmp.core.interfaces.HasGUIObject
getGUIObject, notifyGUIObject, showGUI
 
Methods inherited from interface org.ujmp.core.interfaces.HasLabel
getLabel, setLabel
 
Methods inherited from interface org.ujmp.core.io.ExportMatrixInterface
exportToClipboard, exportToFile, exportToFile, exportToFile, exportToFile, exportToStream, exportToString, exportToWriter
 
Methods inherited from interface org.ujmp.core.interfaces.CoordinateFunctions
allCoordinates, availableCoordinates, getCoordinatesOfMaximum, getCoordinatesOfMinimum, nonZeroCoordinates, selectedCoordinates, selectedCoordinates
 
Methods inherited from interface org.ujmp.core.interfaces.GettersAndSetters
getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsChar, getAsDate, getAsDouble, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsObject, getAsShort, getAsString, getPreferredObject, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsChar, setAsDate, setAsDouble, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsObject, setAsShort, setAsString, toBigDecimalArray, toBigIntegerArray, toBooleanArray, toByteArray, toCharArray, toDateArray, toDoubleArray, toFloatArray, toIntArray, toLongArray, toObjectArray, toShortArray, toStringArray
 
Methods inherited from interface org.ujmp.core.interfaces.BasicMatrixProperties
allValues, bigDecimalValue, bigIntegerValue, booleanValue, byteValue, charValue, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, dateValue, det, doubleValue, equals, equalsAnnotation, equalsContent, floatValue, getAbsoluteValueMean, getAbsoluteValueSum, getColumnCount, getDimensionCount, getEuklideanValue, getMaxValue, getMeanValue, getMinValue, getRMS, getRowCount, getSize, getStdValue, getValueCount, getValueSum, getValueType, getZCount, intValue, isColumnVector, isDiagonal, isEmpty, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSparse, isSPD, isSquare, isSymmetric, isTransient, longValue, norm1, norm2, normF, normInf, rank, setSize, shortValue, stringValue, toString, trace
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.basic.BasicDoubleCalculations
atimes, divide, divide, divide, divide, minus, minus, minus, minus, mtimes, mtimes, mtimes, mtimes, plus, plus, plus, plus, times, times, times, times
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.basic.BasicEntrywiseDoubleCalculations
abs, exp, log, log10, log2, power, power, sign, sqrt
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.rounding.RoundingDoubleCalculations
ceil, floor, round
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.hyperbolic.HyperbolicDoubleCalculations
cosh, sinh, tanh
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.trigonometric.TrigonometricDoubleCalculations
cos, sin, tan
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.creators.CreatorDoubleCalculations
eye, ones, rand, randn, zeros
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.statistical.StatisticalDoubleCalculations
corrcoef, cov, cumprod, cumsum, diff, indexOfMax, indexOfMin, max, mean, min, mutualInf, pairedTTest, prod, std, sum, var
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.decomposition.DecompositionDoubleCalculations
chol, eig, eigSymm, ginv, inv, invSPD, invSymm, lu, pinv, princomp, qr, solve, solveSPD, solveSymm, svd
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.missingvalues.MissingValueDoubleCalculations
addMissing, countMissing, deleteColumnsWithMissingValues, deleteRowsWithMissingValues, impute
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.misc.MiscGeneralDoubleCalculations
append, appendHorizontally, appendVertically, center, fadeIn, fadeOut, normalize, replaceMissingBy, standardize
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.discretize.DiscretizeCalculations
discretizeToColumns
 
Methods inherited from interface org.ujmp.core.booleanmatrix.calculation.BooleanCalculations
and, and, eq, eq, ge, ge, gt, gt, le, le, lt, lt, ne, ne, not, or, or, xor, xor
 
Methods inherited from interface org.ujmp.core.intmatrix.calculation.IntCalculations
discretize
 
Methods inherited from interface org.ujmp.core.stringmatrix.calculation.StringCalculations
lowerCase, removePunctuation, removeWords, replaceRegex, replaceRegex, stem, tfIdf, upperCase
 
Methods inherited from interface org.ujmp.core.objectmatrix.calculation.ObjectCalculations
bootstrap, bootstrap, convert, copy, delete, delete, delete, deleteColumns, deleteColumns, deleteRows, deleteRows, extractAnnotation, fill, flipdim, includeAnnotation, replace, reshape, select, select, select, selectColumns, selectColumns, selectRows, selectRows, shuffle, sortrows, squeeze, subMatrix, swap, toColumnVector, toRowVector, transpose, transpose, transpose, tril, triu, unique, uniqueValueCount
 
Methods inherited from interface org.ujmp.core.interfaces.DistanceMeasures
chebyshevDistanceTo, euklideanDistanceTo, manhattenDistanceTo, minkowskiDistanceTo
 
Methods inherited from interface java.lang.Comparable
compareTo
 
Methods inherited from interface org.ujmp.core.annotation.HasAnnotation
getAnnotation, getAxisAnnotation, getAxisAnnotation, getColumnForLabel, getColumnLabel, getColumnObject, getMatrixAnnotation, getPositionForLabel, getRowForLabel, getRowLabel, getRowObject, setAnnotation, setAxisAnnotation, setAxisAnnotation, setColumnLabel, setColumnObject, setMatrixAnnotation, setRowLabel, setRowObject
 
Methods inherited from interface org.ujmp.core.interfaces.Conversions
toBigDecimalMatrix, toBigIntegerMatrix, toBooleanMatrix, toByteMatrix, toCharMatrix, toDateMatrix, toDoubleMatrix, toFloatMatrix, toIntMatrix, toListMatrix, toLongMatrix, toMapMatrix, toObjectMatrix, toSetMatrix, toShortMatrix, toStringMatrix
 
Methods inherited from interface org.ujmp.core.treematrix.Tree
getChildren, getObjectList, getParentMap, setRoot
 
Methods inherited from interface javax.swing.tree.TreeModel
getRoot
 

Constructor Detail

AbstractTreeMatrix

public AbstractTreeMatrix()
Method Detail

contains

public boolean contains(long... coordinates)
Description copied from interface: CoordinateFunctions
Determines if the given Coordinates are part of the Matrix. If the Matrix is dense, true is returned for all Coordinates smaller than the Matrix's size. For sparse Matrices, this function checks if the coordinates are actually stored in the matrix or not.

Specified by:
contains in interface CoordinateFunctions
Parameters:
coordinates - The coordinates to check
Returns:
a boolean stating if the coordinates are part of the Matrix

isChild

public final boolean isChild(Object parent,
                             Object child)
Specified by:
isChild in interface Tree

isChild

public final boolean isChild(int parentId,
                             int childId)
Specified by:
isChild in interface Tree

getObject

public final Object getObject(int index)
Specified by:
getObject in interface Tree

getParent

public Object getParent(Object o)
Specified by:
getParent in interface Tree

addChildren

public void addChildren(Object parent,
                        Collection<? extends Object> children)
Specified by:
addChildren in interface Tree

getSize

public final long[] getSize()
Specified by:
getSize in interface BasicMatrixProperties

getDouble

public final double getDouble(int row,
                              int column)
Specified by:
getDouble in interface DoubleMatrix2D

getDouble

public final double getDouble(long row,
                              long column)
Specified by:
getDouble in interface DoubleMatrix2D

addChild

public final void addChild(Object parent,
                           Object child)
Specified by:
addChild in interface Tree

removeChild

public final void removeChild(Object parent,
                              Object child)
Specified by:
removeChild in interface Tree

setDouble

public final void setDouble(double value,
                            long row,
                            long column)
Specified by:
setDouble in interface DoubleMatrix2D

setDouble

public void setDouble(double value,
                      int row,
                      int column)
Specified by:
setDouble in interface DoubleMatrix2D

addTreeModelListener

public void addTreeModelListener(TreeModelListener l)
Specified by:
addTreeModelListener in interface TreeModel

getChild

public final Object getChild(Object parent,
                             int index)
Specified by:
getChild in interface TreeModel

getChildCount

public final int getChildCount(Object parent)
Specified by:
getChildCount in interface TreeModel

getIndexOfChild

public final int getIndexOfChild(Object parent,
                                 Object child)
Specified by:
getIndexOfChild in interface TreeModel

isLeaf

public final boolean isLeaf(Object node)
Specified by:
isLeaf in interface TreeModel

removeTreeModelListener

public final void removeTreeModelListener(TreeModelListener l)
Specified by:
removeTreeModelListener in interface TreeModel

valueForPathChanged

public final void valueForPathChanged(TreePath path,
                                      Object newValue)
Specified by:
valueForPathChanged in interface TreeModel

getNumberOfObjects

public final int getNumberOfObjects()
Specified by:
getNumberOfObjects in interface Tree

addObject

public void addObject(Object o)
Specified by:
addObject in interface Tree

getStorageType

public final Matrix.StorageType getStorageType()
Specified by:
getStorageType in interface BasicMatrixProperties
Overrides:
getStorageType in class AbstractSparseDoubleMatrix


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