org.ujmp.commonsmath
Class AbstractCommonsMathDenseDoubleMatrix2D

java.lang.Object
  extended by java.lang.Number
      extended by org.ujmp.core.matrix.AbstractMatrix
          extended by org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix<Double>
              extended by org.ujmp.core.doublematrix.stub.AbstractDoubleMatrix
                  extended by org.ujmp.core.doublematrix.stub.AbstractDenseDoubleMatrix
                      extended by org.ujmp.core.doublematrix.stub.AbstractDenseDoubleMatrix2D
                          extended by org.ujmp.commonsmath.AbstractCommonsMathDenseDoubleMatrix2D
All Implemented Interfaces:
Serializable, Cloneable, Comparable<Matrix>, HasAnnotation, BooleanCalculations, CanPerformCalculations, BasicDoubleCalculations, DoubleCalculations, BasicEntrywiseDoubleCalculations, CreatorDoubleCalculations, EntrywiseDoubleCalculations, HyperbolicDoubleCalculations, MiscEntrywiseDoubleCalculations, RoundingDoubleCalculations, TrigonometricDoubleCalculations, DecompositionDoubleCalculations, DiscretizeCalculations, GeneralDoubleCalculations, MiscGeneralDoubleCalculations, MissingValueDoubleCalculations, StatisticalDoubleCalculations, DenseDoubleMatrix, DenseDoubleMatrix2D, DoubleMatrix, DoubleMatrix2D, GenericMatrix<Double>, GenericMatrix2D<Double>, BasicMatrixProperties, Clearable, Conversions, CoordinateFunctions, CoreObject, DistanceMeasures, GettersAndSetters, HasGUIObject, HasLabel, Wrapper<org.apache.commons.math.linear.RealMatrix>, IntCalculations, ExportMatrixInterface, Matrix, DenseMatrix, DenseMatrix2D, Matrix2D, ObjectCalculations, StringCalculations
Direct Known Subclasses:
CommonsMathArrayDenseDoubleMatrix2D, CommonsMathBlockDenseDoubleMatrix2D

public abstract class AbstractCommonsMathDenseDoubleMatrix2D
extends AbstractDenseDoubleMatrix2D
implements Wrapper<org.apache.commons.math.linear.RealMatrix>

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.ujmp.core.Matrix
Matrix.StorageType
 
Field Summary
 
Fields inherited from class org.ujmp.core.doublematrix.stub.AbstractDenseDoubleMatrix2D
factory
 
Fields inherited from interface org.ujmp.core.doublematrix.DenseDoubleMatrix2D
chol, divideMatrix, divideScalar, eig, inv, invSPD, invSymm, lu, minusMatrix, minusScalar, mtimes, plusMatrix, plusScalar, qr, solve, solveSPD, solveSymm, svd, timesMatrix, timesScalar, transpose
 
Fields inherited from interface org.ujmp.core.Matrix
ALL, COLUMN, LINK, NEW, NONE, ORIG, ROW, X, Y, Z
 
Constructor Summary
AbstractCommonsMathDenseDoubleMatrix2D(org.apache.commons.math.linear.RealMatrix matrix)
           
 
Method Summary
 Matrix chol()
           
 Matrix divide(double value)
           
 Matrix[] eig()
           
 double getDouble(int row, int column)
           
 double getDouble(long row, long column)
           
 long[] getSize()
           
 org.apache.commons.math.linear.RealMatrix getWrappedObject()
           
 Matrix inv()
           
 Matrix invSPD()
           
 Matrix[] lu()
           
 Matrix minus(double value)
           
 Matrix minus(Matrix m2)
           
 Matrix mtimes(Matrix m2)
           
 Matrix plus(double value)
           
 Matrix plus(Matrix m2)
           
 Matrix[] qr()
           
 void setDouble(double value, int row, int column)
           
 void setDouble(double value, long row, long column)
           
 void setWrappedObject(org.apache.commons.math.linear.RealMatrix object)
           
 Matrix solve(Matrix b)
           
 Matrix solveSPD(Matrix b)
           
 Matrix[] svd()
           
 Matrix times(double value)
           
 Matrix transpose()
           
 
Methods inherited from class org.ujmp.core.doublematrix.stub.AbstractDenseDoubleMatrix2D
allCoordinates, divide, getAsDouble, getAsDouble, getDouble, getFactory, getObject, getObject, setAsDouble, setAsDouble, setDouble, setObject, setObject, times
 
Methods inherited from class org.ujmp.core.doublematrix.stub.AbstractDenseDoubleMatrix
contains, getStorageType
 
Methods inherited from class org.ujmp.core.doublematrix.stub.AbstractDoubleMatrix
getAsDouble, getObject, getValueType, setAsDouble, setObject
 
Methods inherited from class org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix
getAsObject, setAsObject
 
Methods inherited from class org.ujmp.core.matrix.AbstractMatrix
abs, addMissing, allValues, and, and, append, appendHorizontally, appendVertically, atimes, availableCoordinates, bigDecimalValue, bigIntegerValue, booleanValue, bootstrap, bootstrap, ceil, center, charValue, chebyshevDistanceTo, clear, clone, compareTo, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, convert, copy, corrcoef, cos, cosh, countMissing, cov, cumprod, cumsum, dateValue, delete, delete, delete, deleteColumns, deleteColumns, deleteColumnsWithMissingValues, deleteRows, deleteRows, deleteRowsWithMissingValues, det, diff, discretize, discretizeToColumns, divide, divide, doubleValue, eigSymm, eq, eq, equals, equalsAnnotation, equalsContent, euklideanDistanceTo, exp, exportToClipboard, exportToFile, exportToFile, exportToFile, exportToFile, exportToStream, exportToString, exportToWriter, extractAnnotation, eye, fadeIn, fadeOut, fill, flipdim, floatValue, floor, ge, ge, getAbsoluteValueMean, getAbsoluteValueSum, getAnnotation, getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsChar, getAsDate, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsShort, getAsString, getAxisAnnotation, getAxisAnnotation, getColumnCount, getColumnForLabel, getColumnLabel, getColumnObject, getCoordinatesOfMaximum, getCoordinatesOfMinimum, getCoreObjectId, getDimensionCount, getEuklideanValue, getGUIObject, getLabel, getMatrixAnnotation, getMaxValue, getMeanValue, getMinValue, getPositionForLabel, getPreferredObject, getRMS, getRowCount, getRowForLabel, getRowLabel, getRowObject, getSize, getStdValue, getValueCount, getValueSum, getZCount, ginv, gt, gt, impute, includeAnnotation, indexOfMax, indexOfMin, intValue, invSymm, isColumnVector, isDiagonal, isEmpty, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSparse, isSPD, isSquare, isSymmetric, isTransient, le, le, log, log10, log2, longValue, lowerCase, lt, lt, manhattenDistanceTo, max, mean, min, minkowskiDistanceTo, minus, minus, mtimes, mtimes, mtimes, mutualInf, ne, ne, nonZeroCoordinates, norm1, norm2, normalize, normF, normInf, not, notifyGUIObject, ones, or, or, pairedTTest, pinv, plus, plus, power, power, princomp, prod, rand, randn, rank, removePunctuation, removeWords, replace, replaceMissingBy, replaceRegex, replaceRegex, reshape, round, select, select, select, selectColumns, selectColumns, selectedCoordinates, selectedCoordinates, selectRows, selectRows, setAnnotation, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsChar, setAsDate, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsShort, setAsString, setAxisAnnotation, setAxisAnnotation, setColumnLabel, setColumnObject, setLabel, setMatrixAnnotation, setRowLabel, setRowObject, setSize, showGUI, shuffle, sign, sin, sinh, solveSymm, sortrows, sqrt, squeeze, standardize, std, stem, stringValue, subMatrix, sum, swap, tan, tanh, tfIdf, times, times, toBigDecimalArray, toBigDecimalMatrix, toBigIntegerArray, toBigIntegerMatrix, toBooleanArray, toBooleanMatrix, toByteArray, toByteMatrix, toCharArray, toCharMatrix, toColumnVector, toDateArray, toDateMatrix, toDoubleArray, toDoubleMatrix, toFloatArray, toFloatMatrix, toIntArray, toIntMatrix, toListMatrix, toLongArray, toLongMatrix, toMapMatrix, toObjectArray, toObjectMatrix, toRowVector, toSetMatrix, toShortArray, toShortMatrix, toString, toStringArray, toStringMatrix, trace, transpose, transpose, tril, triu, unique, uniqueValueCount, upperCase, var, xor, xor, zeros
 
Methods inherited from class java.lang.Number
byteValue, shortValue
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface org.ujmp.core.genericmatrix.GenericMatrix
getObject, setObject
 
Methods inherited from interface org.ujmp.core.Matrix
clone
 
Methods inherited from interface org.ujmp.core.interfaces.CoreObject
getCoreObjectId
 
Methods inherited from interface org.ujmp.core.interfaces.Clearable
clear
 
Methods inherited from interface org.ujmp.core.interfaces.HasGUIObject
getGUIObject, notifyGUIObject, showGUI
 
Methods inherited from interface org.ujmp.core.interfaces.HasLabel
getLabel, setLabel
 
Methods inherited from interface org.ujmp.core.io.ExportMatrixInterface
exportToClipboard, exportToFile, exportToFile, exportToFile, exportToFile, exportToStream, exportToString, exportToWriter
 
Methods inherited from interface org.ujmp.core.interfaces.CoordinateFunctions
availableCoordinates, contains, getCoordinatesOfMaximum, getCoordinatesOfMinimum, nonZeroCoordinates, selectedCoordinates, selectedCoordinates
 
Methods inherited from interface org.ujmp.core.interfaces.GettersAndSetters
getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsChar, getAsDate, getAsDouble, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsObject, getAsShort, getAsString, getPreferredObject, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsChar, setAsDate, setAsDouble, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsObject, setAsShort, setAsString, toBigDecimalArray, toBigIntegerArray, toBooleanArray, toByteArray, toCharArray, toDateArray, toDoubleArray, toFloatArray, toIntArray, toLongArray, toObjectArray, toShortArray, toStringArray
 
Methods inherited from interface org.ujmp.core.interfaces.BasicMatrixProperties
allValues, bigDecimalValue, bigIntegerValue, booleanValue, byteValue, charValue, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, dateValue, det, doubleValue, equals, equalsAnnotation, equalsContent, floatValue, getAbsoluteValueMean, getAbsoluteValueSum, getColumnCount, getDimensionCount, getEuklideanValue, getMaxValue, getMeanValue, getMinValue, getRMS, getRowCount, getSize, getStdValue, getStorageType, getValueCount, getValueSum, getValueType, getZCount, intValue, isColumnVector, isDiagonal, isEmpty, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSparse, isSPD, isSquare, isSymmetric, isTransient, longValue, norm1, norm2, normF, normInf, rank, setSize, shortValue, stringValue, toString, trace
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.basic.BasicDoubleCalculations
atimes, divide, divide, minus, minus, mtimes, mtimes, mtimes, plus, plus, times, times
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.basic.BasicEntrywiseDoubleCalculations
abs, exp, log, log10, log2, power, power, sign, sqrt
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.rounding.RoundingDoubleCalculations
ceil, floor, round
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.hyperbolic.HyperbolicDoubleCalculations
cosh, sinh, tanh
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.trigonometric.TrigonometricDoubleCalculations
cos, sin, tan
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.creators.CreatorDoubleCalculations
eye, ones, rand, randn, zeros
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.statistical.StatisticalDoubleCalculations
corrcoef, cov, cumprod, cumsum, diff, indexOfMax, indexOfMin, max, mean, min, mutualInf, pairedTTest, prod, std, sum, var
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.decomposition.DecompositionDoubleCalculations
eigSymm, ginv, invSymm, pinv, princomp, solveSymm
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.missingvalues.MissingValueDoubleCalculations
addMissing, countMissing, deleteColumnsWithMissingValues, deleteRowsWithMissingValues, impute
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.misc.MiscGeneralDoubleCalculations
append, appendHorizontally, appendVertically, center, fadeIn, fadeOut, normalize, replaceMissingBy, standardize
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.discretize.DiscretizeCalculations
discretizeToColumns
 
Methods inherited from interface org.ujmp.core.booleanmatrix.calculation.BooleanCalculations
and, and, eq, eq, ge, ge, gt, gt, le, le, lt, lt, ne, ne, not, or, or, xor, xor
 
Methods inherited from interface org.ujmp.core.intmatrix.calculation.IntCalculations
discretize
 
Methods inherited from interface org.ujmp.core.stringmatrix.calculation.StringCalculations
lowerCase, removePunctuation, removeWords, replaceRegex, replaceRegex, stem, tfIdf, upperCase
 
Methods inherited from interface org.ujmp.core.objectmatrix.calculation.ObjectCalculations
bootstrap, bootstrap, convert, copy, delete, delete, delete, deleteColumns, deleteColumns, deleteRows, deleteRows, extractAnnotation, fill, flipdim, includeAnnotation, replace, reshape, select, select, select, selectColumns, selectColumns, selectRows, selectRows, shuffle, sortrows, squeeze, subMatrix, swap, toColumnVector, toRowVector, transpose, transpose, tril, triu, unique, uniqueValueCount
 
Methods inherited from interface org.ujmp.core.interfaces.DistanceMeasures
chebyshevDistanceTo, euklideanDistanceTo, manhattenDistanceTo, minkowskiDistanceTo
 
Methods inherited from interface java.lang.Comparable
compareTo
 
Methods inherited from interface org.ujmp.core.annotation.HasAnnotation
getAnnotation, getAxisAnnotation, getAxisAnnotation, getColumnForLabel, getColumnLabel, getColumnObject, getMatrixAnnotation, getPositionForLabel, getRowForLabel, getRowLabel, getRowObject, setAnnotation, setAxisAnnotation, setAxisAnnotation, setColumnLabel, setColumnObject, setMatrixAnnotation, setRowLabel, setRowObject
 
Methods inherited from interface org.ujmp.core.interfaces.Conversions
toBigDecimalMatrix, toBigIntegerMatrix, toBooleanMatrix, toByteMatrix, toCharMatrix, toDateMatrix, toDoubleMatrix, toFloatMatrix, toIntMatrix, toListMatrix, toLongMatrix, toMapMatrix, toObjectMatrix, toSetMatrix, toShortMatrix, toStringMatrix
 

Constructor Detail

AbstractCommonsMathDenseDoubleMatrix2D

public AbstractCommonsMathDenseDoubleMatrix2D(org.apache.commons.math.linear.RealMatrix matrix)
Method Detail

getWrappedObject

public org.apache.commons.math.linear.RealMatrix getWrappedObject()
Specified by:
getWrappedObject in interface Wrapper<org.apache.commons.math.linear.RealMatrix>

setWrappedObject

public void setWrappedObject(org.apache.commons.math.linear.RealMatrix object)
Specified by:
setWrappedObject in interface Wrapper<org.apache.commons.math.linear.RealMatrix>

getDouble

public double getDouble(long row,
                        long column)
                 throws MatrixException
Specified by:
getDouble in interface DoubleMatrix2D
Throws:
MatrixException

getDouble

public double getDouble(int row,
                        int column)
                 throws MatrixException
Specified by:
getDouble in interface DoubleMatrix2D
Throws:
MatrixException

setDouble

public void setDouble(double value,
                      long row,
                      long column)
               throws MatrixException
Specified by:
setDouble in interface DoubleMatrix2D
Throws:
MatrixException

setDouble

public void setDouble(double value,
                      int row,
                      int column)
               throws MatrixException
Specified by:
setDouble in interface DoubleMatrix2D
Throws:
MatrixException

getSize

public long[] getSize()
Specified by:
getSize in interface BasicMatrixProperties

transpose

public Matrix transpose()
Specified by:
transpose in interface ObjectCalculations
Overrides:
transpose in class AbstractDenseDoubleMatrix2D

inv

public Matrix inv()
Specified by:
inv in interface DecompositionDoubleCalculations
Overrides:
inv in class AbstractMatrix

invSPD

public Matrix invSPD()
Specified by:
invSPD in interface DecompositionDoubleCalculations
Overrides:
invSPD in class AbstractMatrix

lu

public Matrix[] lu()
Specified by:
lu in interface DecompositionDoubleCalculations
Overrides:
lu in class AbstractMatrix

qr

public Matrix[] qr()
Specified by:
qr in interface DecompositionDoubleCalculations
Overrides:
qr in class AbstractMatrix

svd

public Matrix[] svd()
Specified by:
svd in interface DecompositionDoubleCalculations
Overrides:
svd in class AbstractMatrix

eig

public Matrix[] eig()
Specified by:
eig in interface DecompositionDoubleCalculations
Overrides:
eig in class AbstractMatrix

chol

public Matrix chol()
Specified by:
chol in interface DecompositionDoubleCalculations
Overrides:
chol in class AbstractMatrix

mtimes

public Matrix mtimes(Matrix m2)
Specified by:
mtimes in interface BasicDoubleCalculations
Overrides:
mtimes in class AbstractDenseDoubleMatrix2D

plus

public Matrix plus(Matrix m2)
Specified by:
plus in interface BasicDoubleCalculations
Overrides:
plus in class AbstractDenseDoubleMatrix2D

minus

public Matrix minus(Matrix m2)
Specified by:
minus in interface BasicDoubleCalculations
Overrides:
minus in class AbstractDenseDoubleMatrix2D

times

public Matrix times(double value)
Specified by:
times in interface BasicDoubleCalculations
Overrides:
times in class AbstractDenseDoubleMatrix2D

divide

public Matrix divide(double value)
Specified by:
divide in interface BasicDoubleCalculations
Overrides:
divide in class AbstractDenseDoubleMatrix2D

plus

public Matrix plus(double value)
Specified by:
plus in interface BasicDoubleCalculations
Overrides:
plus in class AbstractDenseDoubleMatrix2D

minus

public Matrix minus(double value)
Specified by:
minus in interface BasicDoubleCalculations
Overrides:
minus in class AbstractDenseDoubleMatrix2D

solve

public Matrix solve(Matrix b)
Specified by:
solve in interface DecompositionDoubleCalculations
Overrides:
solve in class AbstractMatrix

solveSPD

public Matrix solveSPD(Matrix b)
Specified by:
solveSPD in interface DecompositionDoubleCalculations
Overrides:
solveSPD in class AbstractMatrix


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