org.ujmp.core.doublematrix.stub
Class AbstractDenseDoubleMatrix2D

java.lang.Object
  extended by java.lang.Number
      extended by org.ujmp.core.matrix.AbstractMatrix
          extended by org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix<Double>
              extended by org.ujmp.core.doublematrix.stub.AbstractDoubleMatrix
                  extended by org.ujmp.core.doublematrix.stub.AbstractDenseDoubleMatrix
                      extended by org.ujmp.core.doublematrix.stub.AbstractDenseDoubleMatrix2D
All Implemented Interfaces:
Serializable, Cloneable, Comparable<Matrix>, HasAnnotation, BooleanCalculations, CanPerformCalculations, BasicDoubleCalculations, DoubleCalculations, BasicEntrywiseDoubleCalculations, CreatorDoubleCalculations, EntrywiseDoubleCalculations, HyperbolicDoubleCalculations, MiscEntrywiseDoubleCalculations, RoundingDoubleCalculations, TrigonometricDoubleCalculations, DecompositionDoubleCalculations, DiscretizeCalculations, GeneralDoubleCalculations, MiscGeneralDoubleCalculations, MissingValueDoubleCalculations, StatisticalDoubleCalculations, DenseDoubleMatrix, DenseDoubleMatrix2D, DoubleMatrix, DoubleMatrix2D, GenericMatrix<Double>, GenericMatrix2D<Double>, BasicMatrixProperties, Clearable, Conversions, CoordinateFunctions, CoreObject, DistanceMeasures, GettersAndSetters, HasGUIObject, HasLabel, IntCalculations, ExportMatrixInterface, Matrix, DenseMatrix, DenseMatrix2D, Matrix2D, ObjectCalculations, StringCalculations
Direct Known Subclasses:
ArrayDenseDoubleMatrix2D, BlockDenseDoubleMatrix2D, DefaultDenseDoubleMatrix2D, MortonDenseDoubleMartrix2D, TimeSeriesMatrix

public abstract class AbstractDenseDoubleMatrix2D
extends AbstractDenseDoubleMatrix
implements DenseDoubleMatrix2D

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.ujmp.core.Matrix
Matrix.StorageType
 
Field Summary
static DenseDoubleMatrix2DFactory factory
           
 
Fields inherited from interface org.ujmp.core.doublematrix.DenseDoubleMatrix2D
chol, divideMatrix, divideScalar, eig, inv, invSPD, invSymm, lu, minusMatrix, minusScalar, mtimes, plusMatrix, plusScalar, qr, solve, solveSPD, solveSymm, svd, timesMatrix, timesScalar, transpose
 
Fields inherited from interface org.ujmp.core.Matrix
ALL, COLUMN, LINK, NEW, NONE, ORIG, ROW, X, Y, Z
 
Constructor Summary
AbstractDenseDoubleMatrix2D()
           
 
Method Summary
 Iterable<long[]> allCoordinates()
          Returns an Iterator that goes over all coordinates in the Matrix.
 Matrix divide(double v)
          Divides every entry in the matrix by a scalar.
 Matrix divide(Matrix m2)
          Calculates an entrywise division of the two matrices.
 double getAsDouble(int row, int column)
           
 double getAsDouble(long row, long column)
           
 double getDouble(long... coordinates)
          Returns a double representation of an entry in the matrix.
 DenseDoubleMatrix2DFactory getFactory()
           
 Double getObject(int row, int column)
           
 Double getObject(long row, long column)
           
 Matrix minus(double v)
          Subtracts a specified value from all entries in the matrix.
 Matrix minus(Matrix m2)
          Calculates the difference of the entries in both matrices
 Matrix mtimes(Matrix m2)
          Performs a matrix multiplication on the two matrices.
 Matrix plus(double v)
          Adds a specified value to all entries in the matrix.
 Matrix plus(Matrix m2)
          Calculates the sum of the entries in both matrices
 void setAsDouble(double value, int row, int column)
           
 void setAsDouble(double value, long row, long column)
           
 void setDouble(double value, long... coordinates)
          Sets an entry in the matrix to a double value.
 void setObject(Double o, int row, int column)
           
 void setObject(Double o, long row, long column)
           
 Matrix times(double v)
          Multiplies every entry in the matrix with a scalar.
 Matrix times(Matrix m2)
          Calculates the entrywise product of the two matrices.
 Matrix transpose()
          Returns the transpose of the Matrix, where rows and columns are exchanged.
 
Methods inherited from class org.ujmp.core.doublematrix.stub.AbstractDenseDoubleMatrix
contains, getStorageType
 
Methods inherited from class org.ujmp.core.doublematrix.stub.AbstractDoubleMatrix
getAsDouble, getObject, getValueType, setAsDouble, setObject
 
Methods inherited from class org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix
getAsObject, setAsObject
 
Methods inherited from class org.ujmp.core.matrix.AbstractMatrix
abs, addMissing, allValues, and, and, append, appendHorizontally, appendVertically, atimes, availableCoordinates, bigDecimalValue, bigIntegerValue, booleanValue, bootstrap, bootstrap, ceil, center, charValue, chebyshevDistanceTo, chol, clear, clone, compareTo, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, convert, copy, corrcoef, cos, cosh, countMissing, cov, cumprod, cumsum, dateValue, delete, delete, delete, deleteColumns, deleteColumns, deleteColumnsWithMissingValues, deleteRows, deleteRows, deleteRowsWithMissingValues, det, diff, discretize, discretizeToColumns, divide, divide, doubleValue, eig, eigSymm, eq, eq, equals, equalsAnnotation, equalsContent, euklideanDistanceTo, exp, exportToClipboard, exportToFile, exportToFile, exportToFile, exportToFile, exportToStream, exportToString, exportToWriter, extractAnnotation, eye, fadeIn, fadeOut, fill, flipdim, floatValue, floor, ge, ge, getAbsoluteValueMean, getAbsoluteValueSum, getAnnotation, getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsChar, getAsDate, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsShort, getAsString, getAxisAnnotation, getAxisAnnotation, getColumnCount, getColumnForLabel, getColumnLabel, getColumnObject, getCoordinatesOfMaximum, getCoordinatesOfMinimum, getCoreObjectId, getDimensionCount, getEuklideanValue, getGUIObject, getLabel, getMatrixAnnotation, getMaxValue, getMeanValue, getMinValue, getPositionForLabel, getPreferredObject, getRMS, getRowCount, getRowForLabel, getRowLabel, getRowObject, getSize, getStdValue, getValueCount, getValueSum, getZCount, ginv, gt, gt, impute, includeAnnotation, indexOfMax, indexOfMin, intValue, inv, invSPD, invSymm, isColumnVector, isDiagonal, isEmpty, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSparse, isSPD, isSquare, isSymmetric, isTransient, le, le, log, log10, log2, longValue, lowerCase, lt, lt, lu, manhattenDistanceTo, max, mean, min, minkowskiDistanceTo, minus, minus, mtimes, mtimes, mtimes, mutualInf, ne, ne, nonZeroCoordinates, norm1, norm2, normalize, normF, normInf, not, notifyGUIObject, ones, or, or, pairedTTest, pinv, plus, plus, power, power, princomp, prod, qr, rand, randn, rank, removePunctuation, removeWords, replace, replaceMissingBy, replaceRegex, replaceRegex, reshape, round, select, select, select, selectColumns, selectColumns, selectedCoordinates, selectedCoordinates, selectRows, selectRows, setAnnotation, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsChar, setAsDate, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsShort, setAsString, setAxisAnnotation, setAxisAnnotation, setColumnLabel, setColumnObject, setLabel, setMatrixAnnotation, setRowLabel, setRowObject, setSize, showGUI, shuffle, sign, sin, sinh, solve, solveSPD, solveSymm, sortrows, sqrt, squeeze, standardize, std, stem, stringValue, subMatrix, sum, svd, swap, tan, tanh, tfIdf, times, times, toBigDecimalArray, toBigDecimalMatrix, toBigIntegerArray, toBigIntegerMatrix, toBooleanArray, toBooleanMatrix, toByteArray, toByteMatrix, toCharArray, toCharMatrix, toColumnVector, toDateArray, toDateMatrix, toDoubleArray, toDoubleMatrix, toFloatArray, toFloatMatrix, toIntArray, toIntMatrix, toListMatrix, toLongArray, toLongMatrix, toMapMatrix, toObjectArray, toObjectMatrix, toRowVector, toSetMatrix, toShortArray, toShortMatrix, toString, toStringArray, toStringMatrix, trace, transpose, transpose, tril, triu, unique, uniqueValueCount, upperCase, var, xor, xor, zeros
 
Methods inherited from class java.lang.Number
byteValue, shortValue
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface org.ujmp.core.doublematrix.DoubleMatrix2D
getDouble, getDouble, setDouble, setDouble
 
Methods inherited from interface org.ujmp.core.genericmatrix.GenericMatrix
getObject, setObject
 
Methods inherited from interface org.ujmp.core.Matrix
clone
 
Methods inherited from interface org.ujmp.core.interfaces.CoreObject
getCoreObjectId
 
Methods inherited from interface org.ujmp.core.interfaces.Clearable
clear
 
Methods inherited from interface org.ujmp.core.interfaces.HasGUIObject
getGUIObject, notifyGUIObject, showGUI
 
Methods inherited from interface org.ujmp.core.interfaces.HasLabel
getLabel, setLabel
 
Methods inherited from interface org.ujmp.core.io.ExportMatrixInterface
exportToClipboard, exportToFile, exportToFile, exportToFile, exportToFile, exportToStream, exportToString, exportToWriter
 
Methods inherited from interface org.ujmp.core.interfaces.CoordinateFunctions
availableCoordinates, contains, getCoordinatesOfMaximum, getCoordinatesOfMinimum, nonZeroCoordinates, selectedCoordinates, selectedCoordinates
 
Methods inherited from interface org.ujmp.core.interfaces.GettersAndSetters
getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsChar, getAsDate, getAsDouble, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsObject, getAsShort, getAsString, getPreferredObject, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsChar, setAsDate, setAsDouble, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsObject, setAsShort, setAsString, toBigDecimalArray, toBigIntegerArray, toBooleanArray, toByteArray, toCharArray, toDateArray, toDoubleArray, toFloatArray, toIntArray, toLongArray, toObjectArray, toShortArray, toStringArray
 
Methods inherited from interface org.ujmp.core.interfaces.BasicMatrixProperties
allValues, bigDecimalValue, bigIntegerValue, booleanValue, byteValue, charValue, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, dateValue, det, doubleValue, equals, equalsAnnotation, equalsContent, floatValue, getAbsoluteValueMean, getAbsoluteValueSum, getColumnCount, getDimensionCount, getEuklideanValue, getMaxValue, getMeanValue, getMinValue, getRMS, getRowCount, getSize, getSize, getStdValue, getStorageType, getValueCount, getValueSum, getValueType, getZCount, intValue, isColumnVector, isDiagonal, isEmpty, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSparse, isSPD, isSquare, isSymmetric, isTransient, longValue, norm1, norm2, normF, normInf, rank, setSize, shortValue, stringValue, toString, trace
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.basic.BasicDoubleCalculations
atimes, divide, divide, minus, minus, mtimes, mtimes, mtimes, plus, plus, times, times
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.basic.BasicEntrywiseDoubleCalculations
abs, exp, log, log10, log2, power, power, sign, sqrt
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.rounding.RoundingDoubleCalculations
ceil, floor, round
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.hyperbolic.HyperbolicDoubleCalculations
cosh, sinh, tanh
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.trigonometric.TrigonometricDoubleCalculations
cos, sin, tan
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.creators.CreatorDoubleCalculations
eye, ones, rand, randn, zeros
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.statistical.StatisticalDoubleCalculations
corrcoef, cov, cumprod, cumsum, diff, indexOfMax, indexOfMin, max, mean, min, mutualInf, pairedTTest, prod, std, sum, var
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.decomposition.DecompositionDoubleCalculations
chol, eig, eigSymm, ginv, inv, invSPD, invSymm, lu, pinv, princomp, qr, solve, solveSPD, solveSymm, svd
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.missingvalues.MissingValueDoubleCalculations
addMissing, countMissing, deleteColumnsWithMissingValues, deleteRowsWithMissingValues, impute
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.misc.MiscGeneralDoubleCalculations
append, appendHorizontally, appendVertically, center, fadeIn, fadeOut, normalize, replaceMissingBy, standardize
 
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.discretize.DiscretizeCalculations
discretizeToColumns
 
Methods inherited from interface org.ujmp.core.booleanmatrix.calculation.BooleanCalculations
and, and, eq, eq, ge, ge, gt, gt, le, le, lt, lt, ne, ne, not, or, or, xor, xor
 
Methods inherited from interface org.ujmp.core.intmatrix.calculation.IntCalculations
discretize
 
Methods inherited from interface org.ujmp.core.stringmatrix.calculation.StringCalculations
lowerCase, removePunctuation, removeWords, replaceRegex, replaceRegex, stem, tfIdf, upperCase
 
Methods inherited from interface org.ujmp.core.objectmatrix.calculation.ObjectCalculations
bootstrap, bootstrap, convert, copy, delete, delete, delete, deleteColumns, deleteColumns, deleteRows, deleteRows, extractAnnotation, fill, flipdim, includeAnnotation, replace, reshape, select, select, select, selectColumns, selectColumns, selectRows, selectRows, shuffle, sortrows, squeeze, subMatrix, swap, toColumnVector, toRowVector, transpose, transpose, tril, triu, unique, uniqueValueCount
 
Methods inherited from interface org.ujmp.core.interfaces.DistanceMeasures
chebyshevDistanceTo, euklideanDistanceTo, manhattenDistanceTo, minkowskiDistanceTo
 
Methods inherited from interface java.lang.Comparable
compareTo
 
Methods inherited from interface org.ujmp.core.annotation.HasAnnotation
getAnnotation, getAxisAnnotation, getAxisAnnotation, getColumnForLabel, getColumnLabel, getColumnObject, getMatrixAnnotation, getPositionForLabel, getRowForLabel, getRowLabel, getRowObject, setAnnotation, setAxisAnnotation, setAxisAnnotation, setColumnLabel, setColumnObject, setMatrixAnnotation, setRowLabel, setRowObject
 
Methods inherited from interface org.ujmp.core.interfaces.Conversions
toBigDecimalMatrix, toBigIntegerMatrix, toBooleanMatrix, toByteMatrix, toCharMatrix, toDateMatrix, toDoubleMatrix, toFloatMatrix, toIntMatrix, toListMatrix, toLongMatrix, toMapMatrix, toObjectMatrix, toSetMatrix, toShortMatrix, toStringMatrix
 

Field Detail

factory

public static DenseDoubleMatrix2DFactory factory
Constructor Detail

AbstractDenseDoubleMatrix2D

public AbstractDenseDoubleMatrix2D()
Method Detail

allCoordinates

public final Iterable<long[]> allCoordinates()
Description copied from interface: CoordinateFunctions
Returns an Iterator that goes over all coordinates in the Matrix. It goes from 0,0 to the size of the Matrix.

Specified by:
allCoordinates in interface CoordinateFunctions
Overrides:
allCoordinates in class AbstractMatrix
Returns:
Iterable over all coordinates within a Matrix.

getDouble

public final double getDouble(long... coordinates)
Description copied from interface: DoubleMatrix
Returns a double representation of an entry in the matrix. The stored value will be converted to a double as good as possible.

Specified by:
getDouble in interface DoubleMatrix
Parameters:
coordinates - location of the entry
Returns:
a double representation of the entry

setDouble

public final void setDouble(double value,
                            long... coordinates)
Description copied from interface: DoubleMatrix
Sets an entry in the matrix to a double value. If the matrix cannot store double values, the value will be represented as good as possible.

Specified by:
setDouble in interface DoubleMatrix
Parameters:
value - double value
coordinates - location of the entry

getObject

public final Double getObject(long row,
                              long column)
                       throws MatrixException
Specified by:
getObject in interface GenericMatrix2D<Double>
Throws:
MatrixException

setObject

public final void setObject(Double o,
                            long row,
                            long column)
                     throws MatrixException
Specified by:
setObject in interface GenericMatrix2D<Double>
Throws:
MatrixException

getObject

public final Double getObject(int row,
                              int column)
                       throws MatrixException
Specified by:
getObject in interface GenericMatrix2D<Double>
Throws:
MatrixException

setObject

public final void setObject(Double o,
                            int row,
                            int column)
                     throws MatrixException
Specified by:
setObject in interface GenericMatrix2D<Double>
Throws:
MatrixException

getAsDouble

public double getAsDouble(long row,
                          long column)

getAsDouble

public double getAsDouble(int row,
                          int column)

setAsDouble

public void setAsDouble(double value,
                        int row,
                        int column)

setAsDouble

public void setAsDouble(double value,
                        long row,
                        long column)

mtimes

public Matrix mtimes(Matrix m2)
Description copied from interface: BasicDoubleCalculations
Performs a matrix multiplication on the two matrices. The matrices must be 2-dimensional and have the correct size.

Specified by:
mtimes in interface BasicDoubleCalculations
Overrides:
mtimes in class AbstractMatrix
Parameters:
m2 - the second matrix
Returns:
Matrix product

times

public Matrix times(Matrix m2)
Description copied from interface: BasicDoubleCalculations
Calculates the entrywise product of the two matrices.

Specified by:
times in interface BasicDoubleCalculations
Overrides:
times in class AbstractMatrix
Parameters:
m2 - the second matrix
Returns:
matrix with product of all entries

divide

public Matrix divide(Matrix m2)
Description copied from interface: BasicDoubleCalculations
Calculates an entrywise division of the two matrices.

Specified by:
divide in interface BasicDoubleCalculations
Overrides:
divide in class AbstractMatrix
Parameters:
m2 - the second matrix
Returns:
matrix with all entries divided by the second matrix's entry.

plus

public Matrix plus(Matrix m2)
Description copied from interface: BasicDoubleCalculations
Calculates the sum of the entries in both matrices

Specified by:
plus in interface BasicDoubleCalculations
Overrides:
plus in class AbstractMatrix
Parameters:
m2 - The matrix to add
Returns:
matrix with sum values

minus

public Matrix minus(Matrix m2)
Description copied from interface: BasicDoubleCalculations
Calculates the difference of the entries in both matrices

Specified by:
minus in interface BasicDoubleCalculations
Overrides:
minus in class AbstractMatrix
Parameters:
m2 - The matrix to subtract
Returns:
matrix with difference values

minus

public Matrix minus(double v)
Description copied from interface: BasicDoubleCalculations
Subtracts a specified value from all entries in the matrix.

Specified by:
minus in interface BasicDoubleCalculations
Overrides:
minus in class AbstractMatrix
Parameters:
v - the value to subtract
Returns:
Matrix with the entries minus the value

plus

public Matrix plus(double v)
Description copied from interface: BasicDoubleCalculations
Adds a specified value to all entries in the matrix.

Specified by:
plus in interface BasicDoubleCalculations
Overrides:
plus in class AbstractMatrix
Parameters:
v - the value to add
Returns:
Matrix with the entries plus the value

times

public Matrix times(double v)
Description copied from interface: BasicDoubleCalculations
Multiplies every entry in the matrix with a scalar.

Specified by:
times in interface BasicDoubleCalculations
Overrides:
times in class AbstractMatrix
Parameters:
v - factor to multiply with
Returns:
Matrix with all entries multiplied by a factor.

divide

public Matrix divide(double v)
Description copied from interface: BasicDoubleCalculations
Divides every entry in the matrix by a scalar.

Specified by:
divide in interface BasicDoubleCalculations
Overrides:
divide in class AbstractMatrix
Parameters:
v - factor by which to divide
Returns:
Matrix with all entries divided by a factor.

transpose

public Matrix transpose()
Description copied from interface: ObjectCalculations
Returns the transpose of the Matrix, where rows and columns are exchanged. This works also if the Matrix has more than two dimensions.

Specified by:
transpose in interface ObjectCalculations
Overrides:
transpose in class AbstractMatrix
Returns:
transposed Matrix.

getFactory

public DenseDoubleMatrix2DFactory getFactory()
Specified by:
getFactory in interface DenseDoubleMatrix
Specified by:
getFactory in interface DenseDoubleMatrix2D
Specified by:
getFactory in interface DoubleMatrix
Specified by:
getFactory in interface DoubleMatrix2D
Specified by:
getFactory in interface Matrix
Specified by:
getFactory in interface DenseMatrix
Specified by:
getFactory in interface DenseMatrix2D
Specified by:
getFactory in interface Matrix2D
Overrides:
getFactory in class AbstractDenseDoubleMatrix


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